AIR CONDITIONING SERVICING

AIR CONDITIONING SERVICING DAILY
Menu
  • Home
  • AC Repair
  • Air Conditioning
  • HVAC
  • Furnace Repair
  • Heating Repair
  • TERMS AND CONDITIONS
  • PRIVACY POLICY
  • CONTACT US

Home ยป Bacterial ribosome collision sensing by a MutS DNA repair ATPase paralogue

Bacterial ribosome collision sensing by a MutS DNA repair ATPase paralogue

HVAC Expert March 9, 2022
  • Joazeiro, C. A. P. Ribosomal stalling during translation: providing substrates for ribosome-associated protein quality control. Annu. Rev. Cell Dev. Biol. 33, 343–368 (2017).

    CAS 
    PubMed 

    Google Scholar 

  • Meydan, S. & Guydosh, N. R. A cellular handbook for collided ribosomes: surveillance pathways and collision types. Curr. Genet. 67, 19–26 (2021).

    Startup Dwellwell Raises $15M to Launch Proactive Home Repair System
    Startup Dwellwell Raises $15M to Launch Proactive Home Repair SystemRead more

    CAS 
    PubMed 

    Google Scholar 

  • Modrich, P. Mechanisms in E. coli and human mismatch repair (Nobel Lecture). Angew. Chem. Int. Ed. Engl. 55, 8490–8501 (2016).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Moore, S. D. & Sauer, R. T. The tmRNA system for translational surveillance and ribosome rescue. Annu. Rev. Biochem. 76, 101–124 (2007).

    CAS 
    PubMed 

    Google Scholar 

  • Joazeiro, C. A. P. Mechanisms and functions of ribosome-associated protein quality control. Nat. Rev. Mol. Cell Biol. 20, 368–383 (2019).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Venkataraman, K., Guja, K. E., Garcia-Diaz, M. & Karzai, A. W. Non-stop mRNA decay: a special attribute of trans-translation mediated ribosome rescue. Front. Microbiol. 5, 93 (2014).

    PubMed 
    PubMed Central 

    Google Scholar 

  • Howard, C. J. & Frost, A. Ribosome-associated quality control and CAT tailing. Crit. Rev. Biochem. Mol. Biol. 56, 603–620 (2021).

    CAS 
    PubMed 

    Google Scholar 

  • Lytvynenko, I. et al. Alanine tails signal proteolysis in bacterial ribosome-associated quality control. Cell 178, 76–90 (2019).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • D’Orazio, K. N. & Green, R. Ribosome states signal RNA quality control. Mol. Cell 81, 1372–1383 (2021).

    PubMed 

    Google Scholar 

  • Vind, A. C., Genzor, A. V. & Bekker-Jensen, S. Ribosomal stress-surveillance: three pathways is a magic number. Nucleic Acids Res. 48, 10648–10661 (2020).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Ikeuchi, K. et al. Collided ribosomes form a unique structural interface to induce Hel2‐driven quality control pathways. EMBO J. 38, 1–40 (2019).

    Google Scholar 

  • Simms, C. L., Yan, L. L. & Zaher, H. S. Ribosome collision is critical for quality control during no-go decay. Mol. Cell 68, 361–373 (2017).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Juszkiewicz, S. et al. ZNF598 is a quality control sensor of collided ribosomes. Mol. Cell 72, 469–481 (2018).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Garzia, A. et al. The E3 ubiquitin ligase and RNA-binding protein ZNF598 orchestrates ribosome quality control of premature polyadenylated mRNAs. Nat. Commun. 8, 16056 (2017).

    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Sundaramoorthy, E. et al. ZNF598 and RACK1 regulate mammalian ribosome-associated quality control function by mediating regulatory 40S ribosomal ubiquitylation. Mol. Cell 65, 751–760 (2017).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Juszkiewicz, S., Speldewinde, S. H., Wan, L., Svejstrup, J. Q. & Hegde, R. S. The ASC-1 complex disassembles collided ribosomes. Mol. Cell 79, 603–614 (2020).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Matsuo, Y. et al. RQT complex dissociates ribosomes collided on endogenous RQC substrate SDD1. Nat. Struct. Mol. Biol. 27, 323–332 (2020).

    CAS 
    PubMed 

    Google Scholar 

  • Matsuo, Y. et al. Ubiquitination of stalled ribosome triggers ribosome-associated quality control. Nat. Commun. 8, 159 (2017).

    ADS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Glover, M. L. et al. NONU-1 encodes a conserved endonuclease required for mRNA translation surveillance. Cell Rep. 30, 4321–4331 (2020).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • D’Orazio, K. N. et al. The endonuclease Cue2 cleaves mRNAs at stalled ribosomes during no go decay. eLife 8, e49117 (2019).

    PubMed 
    PubMed Central 

    Google Scholar 

  • Nürenberg-Goloub, E. & Tampé, R. Ribosome recycling in mRNA translation, quality control, and homeostasis. Biol. Chem. 401, 47–61 (2019).

    PubMed 

    Google Scholar 

  • Donaldson, K. M., Yin, H., Gekakis, N., Supek, F. & Joazeiro, C. A. P. Ubiquitin signals protein trafficking via interaction with a novel ubiquitin binding domain in the membrane fusion regulator, Vps9p. Curr. Biol. 13, 258–262 (2003).

    CAS 
    PubMed 

    Google Scholar 

  • Burby, P. E. & Simmons, L. A. MutS2 promotes homologous recombination in Bacillus subtilis. J. Bacteriol. 199, e00682-16 (2017).

    PubMed 

    Google Scholar 

  • Pinto, A. V. et al. Suppression of homologous and homeologous recombination by the bacterial MutS2 protein. Mol. Cell 17, 113–120 (2005).

    CAS 
    PubMed 

    Google Scholar 

  • Hingorani, M. M. Mismatch binding, ADP–ATP exchange and intramolecular signaling during mismatch repair. DNA Repair 38, 24–31 (2016).

    CAS 
    PubMed 

    Google Scholar 

  • Groothuizen, F. S. & Sixma, T. K. The conserved molecular machinery in DNA mismatch repair enzyme structures. DNA Repair 38, 14–23 (2016).

    CAS 
    PubMed 

    Google Scholar 

  • Kyrpides, N. C., Woese, C. R. & Ouzounis, C. A. KOW: a novel motif linking a bacterial transcription factor with ribosomal proteins. Trends Biochem. Sci. 21, 425–426 (1996).

    CAS 
    PubMed 

    Google Scholar 

  • Fukui, K. & Kuramitsu, S. Structure and function of the small MutS-related domain. Mol. Biol. Int. 2011, 691735 (2011).

    PubMed 
    PubMed Central 

    Google Scholar 

  • Sachadyn, P. Conservation and diversity of MutS proteins. Mutat. Res. 694, 20–30 (2010).

    CAS 
    PubMed 

    Google Scholar 

  • Pochopien, A. A. et al. Structure of Gcn1 bound to stalled and colliding 80S ribosomes. Proc. Natl Acad. Sci. USA 118, e2022756118 (2021).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Sohmen, D. et al. Structure of the Bacillus subtilis 70S ribosome reveals the basis for species-specific stalling. Nat. Commun. 6, 6941 (2015).

    ADS 
    CAS 
    PubMed 

    Google Scholar 

  • Smith, A. M., Costello, M. S., Kettring, A. H., Wingo, R. J. & Moore, S. D. Ribosome collisions alter frameshifting at translational reprogramming motifs in bacterial mRNAs. Proc. Natl Acad. Sci. USA 116, 21769–21779 (2019).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Borovinskaya, M. A., Shoji, S., Holton, J. M., Fredrick, K. & Cate, J. H. D. A steric block in translation caused by the antibiotic spectinomycin. ACS Chem. Biol. 2, 545–552 (2007).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Brodersen, D. E. et al. The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit. Cell 103, 1143–1154 (2000).

    CAS 
    PubMed 

    Google Scholar 

  • Svetlov, M. S. et al. High-resolution crystal structures of ribosome-bound chloramphenicol and erythromycin provide the ultimate basis for their competition. RNA 25, 600–606 (2019).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Filbeck, S. et al. Mimicry of canonical translation elongation underlies alanine tail synthesis in RQC. Mol. Cell 81, 104–114 (2021).

    CAS 
    PubMed 

    Google Scholar 

  • Crowe-McAuliffe, C. et al. Structural basis for bacterial ribosome-associated quality control by RqcH and RqcP. Mol. Cell 81, 115–126 (2021).

    CAS 
    PubMed 

    Google Scholar 

  • Takada, H. et al. RqcH and RqcP catalyze processive poly-alanine synthesis in a reconstituted ribosome-associated quality control system. Nucleic Acids Res. 49, 8355–8369 (2021).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Thrun, A. et al. Convergence of mammalian RQC and C-end rule proteolytic pathways via alanine tailing. Mol. Cell 81, 2112–2122 (2021).

    CAS 
    PubMed 

    Google Scholar 

  • Korostelev, A., Trakhanov, S., Laurberg, M. & Noller, H. F. Crystal structure of a 70S ribosome–tRNA complex reveals functional interactions and rearrangements. Cell 126, 1065–1077 (2006).

    CAS 
    PubMed 

    Google Scholar 

  • Tejada-Arranz, A., de Crécy-Lagard, V. & de Reuse, H. Bacterial RNA degradosomes: molecular machines under tight control. Trends Biochem. Sci. 45, 42–57 (2020).

    CAS 
    PubMed 

    Google Scholar 

  • Arnaud, M., Chastanet, A. & Débarbouillé, M. New vector for efficient allelic replacement in naturally nontransformable, low-GC-content, gram-positive bacteria. Appl. Environ. Microbiol. 70, 6887–6891 (2004).

    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Koo, B.-M. et al. Construction and analysis of two genome-scale deletion libraries for Bacillus subtilis. Cell Syst. 4, 291–305 (2017).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Mende, D. R. et al. proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes. Nucleic Acids Res. 48, D621–D625 (2020).

    CAS 
    PubMed 

    Google Scholar 

  • Bucher, P., Karplus, K., Moeri, N. & Hofmann, K. A flexible motif search technique based on generalized profiles. Comput. Chem. 20, 3–23 (1996).

    CAS 
    PubMed 

    Google Scholar 

  • Levy, J. A., LaFlamme, C. W., Tsaprailis, G., Crynen, G. & Page, D. T. Dyrk1a mutations cause undergrowth of cortical pyramidal neurons via dysregulated growth factor signaling. Biol. Psychiatry 90, 295–306 (2021).

    CAS 
    PubMed 

    Google Scholar 

  • Schindelin, J. et al. Fiji: an open-source platform for biological-image analysis. Nat. Methods 9, 676–682 (2012).

    CAS 
    PubMed 

    Google Scholar 

  • Zivanov, J., Nakane, T. & Scheres, S. H. W. Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1. IUCrJ 7, 253–267 (2020).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Pettersen, E. F. et al. UCSF Chimera—a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605–1612 (2004).

    CAS 
    PubMed 

    Google Scholar 

  • Crowe-McAuliffe, C. et al. Structural basis for antibiotic resistance mediated by the Bacillus subtilis ABCF ATPase VmlR. Proc. Natl Acad. Sci. USA 115, 8978–8983 (2018).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Matzov, D. et al. The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus. Nat. Commun. 8, 723 (2017).

    ADS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Hoffman, D. W. et al. Crystal structure of prokaryotic ribosomal protein L9: a bi-lobed RNA-binding protein. EMBO J. 13, 205–212 (1994).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Zimmermann, L. et al. A completely reimplemented MPI Bioinformatics Toolkit with a new HHpred server at its core. J. Mol. Biol. 430, 2237–2243 (2018).

    CAS 
    PubMed 

    Google Scholar 

  • Liebschner, D. et al. Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix. Acta Crystallogr. D 75, 861–877 (2019).

    CAS 

    Google Scholar 

  • Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. Features and development of Coot. Acta Crystallogr. D 66, 486–501 (2010).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Croll, T. I. ISOLDE: a physically realistic environment for model building into low-resolution electron-density maps. Acta Crystallogr. D 74, 519–530 (2018).

    CAS 

    Google Scholar 

  • Jumper, J. et al. Highly accurate protein structure prediction with AlphaFold. Nature 596, 583–589 (2021).

    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Kelley, L. A., Mezulis, S., Yates, C. M., Wass, M. N. & Sternberg, M. J. E. The Phyre2 web portal for protein modeling, prediction and analysis. Nat. Protoc. 10, 845–858 (2015).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Humphrey, W., Dalke, A. & Schulten, K. VMD: visual molecular dynamics. J. Mol. Graph. 14, 33–38 (1996).

    CAS 
    PubMed 

    Google Scholar 

  • Ribeiro, J. V. et al. QwikMD—integrative molecular dynamics toolkit for novices and experts. Sci. Rep. 6, 26536 (2016).

    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Trabuco, L. G., Villa, E., Mitra, K., Frank, J. & Schulten, K. Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. Structure 16, 673–683 (2008).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Phillips, J. C. et al. Scalable molecular dynamics on CPU and GPU architectures with NAMD. J. Chem. Phys. 153, 044130 (2020).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Rundlet, E. J. et al. Structural basis of early translocation events on the ribosome. Nature 595, 741–745 (2021).

    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Loveland, A. B., Demo, G. & Korostelev, A. A. Cryo-EM of elongating ribosome with EF-Tu•GTP elucidates tRNA proofreading. Nature 584, 640–645 (2020).

    ADS 
    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Goddard, T. D. et al. UCSF ChimeraX: meeting modern challenges in visualization and analysis. Protein Sci. 27, 14–25 (2018).

    CAS 
    PubMed 

    Google Scholar 

  • Amiri, H. & Noller, H. F. Structural evidence for product stabilization by the ribosomal mRNA helicase. RNA 25, 364–375 (2019).

    CAS 
    PubMed 
    PubMed Central 

    Google Scholar 

  • Prev Article
    Next Article

    About The Author

    HVAC Expert

    Recent Posts

    • How To Ac Pro
    • Can Electric Hvac Cause Carbon Monoxide
    • How To Reset Hvac Blower Sleeper Fuse
    • Can You Get Hvac Certified Online
    • How To Run Hvac Duct In 2X4 Wall

    AIR CONDITIONING SERVICING

    AIR CONDITIONING SERVICING DAILY
    Copyright © 2023 AIR CONDITIONING SERVICING
    Theme by Air Conditioning Servicing

    Ad Blocker Detected

    Our website is made possible by displaying online advertisements to our visitors. Please consider supporting us by disabling your ad blocker.

    Refresh